Publikationen 2024
Bandyra KJ, Fröhlich KS, Vogel J, Rodnina M, Goyal A, Luisi BF (2024)
Cooperation of regulatory RNA and the RNA degradosome in transcript surveillance
Nucleic Acids Research 52(15):9161-9173
Behlendorf C, Diwo M, Neumann-Schaal M, Fuchs M, Körner D, Jänsch L, Faber F, Blankenfeldt W (2024)
Formation of the pyruvoyl-dependent proline reductase Prd from Clostridioides difficile requires the maturation enzyme PrdH
PNAS Nexus 25;3(7):pgae249. doi: 10.1093/pnasnexus/pgae249
Cossart P, Hacker J, Holden DH, Normark S, Vogel J (2024)
Meeting report 'Microbiology 2023: from single cell to microbiome and host', an international interacademy conference in Würzburg
Microlife 5;5uqae008. doi: 10.1093/femsml/uqae008
Costa B, Becker J, Krammer T, Mulenge F, Durán V, Pavlou A, Gern OL, Chu X, Li Y, Cicin-Šain L, …, Saliba AE, Erhard F, Kalinke U (2024)
Human cytomegalovirus exploits STING signaling and counteracts IFN/ISG induction to facilitate infection of dendritic cells
Nature Communications 15 (1): 1745
Duell J, Leipold AM, Appenzeller S, Fuhr V, Rauert-Wunderlich H, Da Via M, Dietrich O, Toussaint C, Imdahl F, Eisele F, Afrin N, Grundheber L, Einsele H, Weinhold N, Rosenwald A, Topp MS, Saliba AE, Rasche L (2024)
Sequential antigen loss and branching evolution in lymphoma after CD19- and CD20-targeted T-cell-redirecting therapy
Blood 22;143(8):685-696. doi: 10.1182/blood.2023021672
El Mouali Y, Tawk C, Huang KD, Amend L, Lesker TR, Ponath F, Vogel J, Strowig T (2024)
The RNA landscape of the human commensal Segatella copri reveals a small RNA essential for gut colonization
Cell Host Microbe S1931-3128(24)00352-4
Gerovac M, Chihara K, Wicke L, Böttcher B, Lavigne R, Vogel J (2024)
Phage proteins target and co-opt host ribosomes immediately upon infection
Nature Microbiology 9(3):787-800
Gerovac M, Ðurica-Mitić S, Buhlmann L, Rech V, Zhu Y, Carien S, Popella L, Vogel J (2024)
Non-genetic messenger RNA silencing reveals essential genes in phage-host interplay
bioRxiv https://doi.org/10.1101/2024.07.31.605949
Ghosh C, Popella L, Dhamodharan V, Jung J, Dietzsch J, Barquist L, Höbartner C, Vogel J (2024)
A comparative analysis of peptide-delivered antisense antibiotics employing diverse nucleotide mimics
RNA 14:rna.079969.124. doi: 10.1261/rna.079969.124
Hamdy A, Marciniak T, Alseqely M, Ziebuhr W, Abouelmagd E, Abouelfetouh A (2024)
Phenotypic and genotypic characterization of commensal staphylococci isolated from young volunteers in Alexandria, Egypt
Scientific Reports 27;14(1):14850. doi: 10.1038/s41598-024-60924-8
Hamrock FJ, Ryan D, Shaibah A, Ershova AS, Mogre A, Sulimani MM, Reichardt S, Hokamp K, Westermann AJ, Kröger C (2024)
Global analysis of the RNA-RNA interactome in Acinetobacter baumannii AB5075 uncovers a small regulatory RNA repressing the virulence-related outer membrane protein CarO
Nucleic Acids Research gkae668
Hör J, Wolf SG, Sorek R (2024)
Bacteria conjugate ubiquitin-like proteins to interfere with phage assembly
Nature 631(8022):850-856
Jenniches L, Michaux C, Popella L, Reichardt S, Vogel J, Westermann AJ, Barquist L (2024)
Improved RNA stability estimation through Bayesian modeling reveals most Salmonella transcripts have subminute half-lives
PNAS 2;121(14):e2308814121. doi: 10.1073/pnas.2308814121
Knoll R, Helbig ET, Dahm K, Bolaji O, Hamm F, Dietrich O, van Uelft M, Müller S, Bonaguro L, Schulte-Schrepping J, Petrov L, Krämer B, Kraut M, Stubbemann P, Thibeault C, Brumhard S, Theis H, Hack G, …….Saliba AE, Ulas T, Polansky JK, Sawitzki B, Sander LE, Schultze JL, Aschenbrenner AC, Kurth F (2024)
The life-saving benefit of dexamethasone in severe COVID-19 is linked to a reversal of monocyte dysregulation
Cell 187(16):4318-4335.e20. doi: 10.1016/j.cell.2024.06.014
König F, Svensson SL, Sharma CM (2024)
Interplay of two small RNAs fine-tunes hierarchical flagella gene expression in Campylobacter jejuni
Nature Communications 19;15(1):5240. doi: 10.1038/s41467-024-48986-8
Krueger J, Preusse M, Oswaldo Gomez N, Frommeyer YN, Doberenz S, Lorenz A, Kordes A, Grobe S, Müsken M, Depledge DP, Svensson SL, Weiss S, Kaever V, Pich A, Sharma CM, Ignatova Z, Häussler S (2024)
tRNA epitranscriptome determines pathogenicity of the opportunistic pathogen Pseudomonas aeruginosa
Proceeding of the National Acadamy of Sciences USA 121(11):e2312874121
Kumar N, Prakash PG, Wentland C, Kurian SM, Jethva G, Brinkmann V, Mollenkopf HJ, Krammer T, Toussaint C, Saliba AE, Biebl M, Jürgensen C, Wiedenmann B, Meyer TF, Gurumurthy RK, Chumduri C (2024)
Decoding spatiotemporal transcriptional dynamics and epithelial fibroblast crosstalk during gastroesophageal junction development through single cell analysis
Nat Communications 9;15(1):3064. doi: 10.1038/s41467-024-47173-z
McQuail J, Matera G, Gräfenhan T, Bischler T, Haberkant P, Stein F, Vogel J, Wigneshweraraj S (2024)
Global Hfq-mediated RNA interactome of nitrogen starved Escherichia coli uncovers a conserved post-transcriptional regulatory axis required for optimal growth recovery
Nucleic Acids Research 21;52(5):2323-2339. doi: 10.1093/nar/gkad1211
Nyasinga J, Munshi Z, Kigen C, Nyerere A, Musila L, Whitelaw A, Ziebuhr W, Revathi G (2024)
Displacement of Hospital-Acquired, Methicillin-Resistant Staphylococcus aureus Clones by Heterogeneous Community Strains in Kenya over a 13-Year Period
Microorganisms 8;12(6):1171. doi: 10.3390/microorganisms12061171
Ocloo R, Newton-Foot M, Chabuka L, Ziebuhr W, Whitelaw AC (2024)
Epidemiology and antibiotic resistance of staphylococci on commercial pig farms in Cape Town, South Africa
Scientific Reports 14(1):19747
Piollet M, Porsch F, Rizzo G, Kapser F, Schulz DJJ, Kiss MG, Schlepckow K, Morenas-Rodriguez E, Sen MO, Gropper J, ………Zernecke A, Binder CJ, Cochain C (2024)
TREM2 protects from atherosclerosis by limiting necrotic core formation
Nat Cardiovasc 3:269-282. doi: 10.1038/s44161-024-00429-9. Epub 2024 Mar 12
Ponath F, Zhu Y, Vogel J (2024)
Transcriptome fine-mapping in Fusobacterium nucleatum reveals FoxJ, a new σE-dependent small RNA with unusual mRNA activation activity
mBio 4:e0353623. doi: 10.1128/mbio.03536-23
Prezza G, Liao C, Reichardt S, Beisel CL, Westermann AJ (2024)
CRISPR-based screening of small RNA modulators of bile susceptibility in Bacteroides thetaiotaomicron
PNAS 6;121(6):e2311323121. doi: 10.1073/pnas.2311323121
Prezza G, Westermann AJ (2024)
CRISPR Interference-Based Functional Small RNA Genomics
Methods Mol Biol 2741:101-116. doi: 10.1007/978-1-0716-3565-0_6
Putzeys L, Wicke L, Boon M, van Noort V, Vogel J, Lavigne R (2024)
Refining the transcriptional landscapes for distinct clades of virulent phages infecting Pseudomonas aeruginosa
Microlife 28;5:uqae002. doi: 10.1093/femsml/uqae002
Putzeys L, Wicke L, Brandão A, Boon M, Pires DP, Azeredo J, Vogel J, Lavigne R, Gerovac M (2024)
Exploring the transcriptional landscape of phage-host interactions using novel high-throughput approaches
Current Opinion in Microbiology 77:102419
Quelquejay H, Al-Rifai R, Silvestro M, Vandestienne M, Ferreira I, Mirault T, Henrion D, Zhong X, Santos-Zas I, Goudot G, Alayrac P, Robidel E, Autret G, Balvay D, Taleb S, Tedgui A, Boulanger CM, Zernecke A, Saliba AE, Hadchouel J, Ramkhelawon B, Cochain C, Bergaya S, Jeunemaitre X, Ait-Oufella H. L-(2024)
Wnk1 Deletion in Smooth Muscle Cells Causes Aortitis and Inflammatory Shift
Circulation Research 135(4):488-502
Ramírez-Zavala B, Hoffmann A, Krüger I, Schwanfelder S, Barker KS, Rogers PD, Morschhäuser J (2024)
Probing gene function in Candida albicans wild-type strains by Cas9-facilitated one-step integration of two dominant selection markers: a systematic analysis of recombination events at the target locus
mSphere 9(7):e0038824
Ramírez-Zavala B, Krüger I, Schwanfelder S, Barker KS, Rogers PD, Morschhäuser J (2024)
The zinc cluster transcription factor Znc1 regulates Rta3-dependent miltefosine resistance in Candida albicans
mSphere 9(7):e0027024
Ryan D, Bornet E, Prezza G, Alampalli SV, Franco de Carvalho T, Felchle H, Ebbecke T, Hayward RJ, Deutschbauer AM, Barquist L, Westermann AJ (2024)
An expanded transcriptome atlas for Bacteroides thetaiotaomicron reveals a small RNA that modulates tetracycline sensitivity
Nat Microbiol 9(4):1130-1144. doi: 10.1038/s41564-024-01642-9
Schäfer S, Gogiraju R, Rösch M, Kerstan Y, Beck L, Garbisch J, Saliba AE, Gisterå A, Hermanns HM, Boon L, Kastenmüller W, Schäfer K, Cochain C, Zernecke A (2024)
CD8+ T Cells Drive Plaque Smooth Muscle Cell Dedifferentiation in Experimental Atherosclerosis
Arteriosclerosis, Thrombosis and Vascular Biology 44(8):1852-1872
Trussler RS, Scherba N-JQ, Ellis MJ, Förstner KU, Albert M, Westermann AJ, Haniford DB (2024)
A small RNA derived from the 5’ end of the IS200 tnpA transcript regulates multiple virulence regulons in Salmonella Typhimurium
bioRxiv https://doi.org/10.1101/2024.06.26.600842
Wannasrichan W, Krobthong S, Morgan CJ, Armbruster EG, Gerovac M, Yingchutrakul Y, Wongtrakoongate P, Vogel J, Aonbangkhen C, Nonejuie P, Pogliano J, Chaikeeratisak V (2024)
A phage nucleus-associated protein from the jumbophage Churi inhibits bacterial growth through protein translation interference
bioRxiv [Preprint] 16:2024.06.15.599175. doi: 10.1101/2024.06.15.599175
Werner J, Umstätter F, Hertlein T, Mühlberg E, Beijer B, Wohlfart S, Zimmermann S, Haberkorn U, Ohlsen K, Fricker G, Mier W, Uhl P (2024)
Oral Delivery of the Vancomycin Derivative FU002 by a Surface-Modified Liposomal Nanocarrier
Advanced Healthcare Mater 13(14):e2303654. doi: 10.1002
Werner J, Umstätter F, Hertlein T, Mühlberg E, Beijer B, Wohlfart S, Zimmermann S, Haberkorn U, Ohlsen K, Fricker G, Mier W, Uhl P (2024)
Oral Delivery of the Vancomycin Derivative FU002 by a Surface-Modified Liposomal Nanocarrier
Advanced Healthcare Mater 22:e2303654. doi: 10.1002
Zhang K, Repnik U, Diab N, Friske D, Pütz A, Bachmann AZ, Gubbi NMKP, Hensel M, Förstner KU, Westermann AJ, Dupont A, Hornef MW (2024)
Non-professional efferocytosis of Salmonella-infected intestinal epithelial cells in the neonatal host
J Exp Med 4;221(3):e20231237. doi: 10.1084/jem.20231237
Zhu Y, Ponath F, Cosi V, Vogel J (2024)
A global survey of small RNA interactors identifies KhpA and KhpB as major RNA-binding proteins in Fusobacterium nucleatum
Nucleic Acids Research 24;52(7):3950-3970. doi: 10.1093/nar/gkae010
