inGeno

inGeno allows rapid comparison between two genomes including genome rearrangement, species specific island and protein functions.

Download: inGeno

Features:

1. Dot-analysis and plot the results
2. User-friendly comparison interface
3. Gene information retrieval.
4. Linear regression and heuristic locus collinear blocks (LCB) recognition process
5. Pseudo-positive orthologous genes reducing procedure (low-noise control)
6. Color clusters re-definition using easy-used control panel.
7. Text-mining operations helpful for precisely extracting the gene information.
8. A sequence conversion tool which can transform rich-format genome sequence files into proteome multi-FASTA format files, which is suitable for making a BLAST or Smith-Waterman analysis.
9. Paracel GeneMatcher alignment report is supported, which make sense to obtain ideal sensitive results rapidly.

Contact information:

Prof. Dr. Thomas Dandekar: dandekar@biozentrum.uni-wuerzburg.de

Dr. Chunguang Liang

: liang@biozentrum.uni-wuerzburg.de

Tel.: +49 (0)931 318 4551
Tel.: +49 (0)931 318 4561
Fax: +49 (0)931 318 4552

Post: Bioinformatics Dept., Biocenter Am Hubland, University of Wuerzburg, Germany
PLZ: D-97074